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Dot Plot

Sequence Comparison Visualization

Compare two sequences visually to identify similarities, repeats, insertions, and inversions.

Larger windows reduce noise but may miss short similarities.
Minimum matches within window to plot a dot.
Generating dot plot...

How to Interpret

  • Diagonal line: Sequence similarity
  • Parallel lines: Repeated regions
  • Perpendicular lines: Inverted repeats
  • Gaps: Insertions or deletions

Citations

Biochemintelli

Dot Plot (www.biochemintelli.com/dotplot)

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