Understand why PDBx/mmCIF is replacing legacy PDB as the complete archive format, what changes in 2027, how AlphaFold fits, and when conversion remains appropriate.
Read the analysisExplore by topic
Filter the publication by research area or keyword.
Filtering by #AlphaFold 104 research keywords Select a specific method, workflow, or concept
Latest publications
Evidence-led articles on scientific methods, reproducible workflows, and software decisions.
How to Choose a Protein Structure for Molecular Docking: Holo, Apo, AlphaFold, or an Ensemble?
Choose a receptor by target state, local pocket evidence, ligand context, and validation. Compare when a holo, apo, AlphaFold, or receptor ensemble best fits a reproducible protein-small-molecule docking campaign.
AlphaFold Didn’t Replace Molecular Docking—It Unlocked Its Next Era
AlphaFold has dramatically reduced the structural bottleneck that kept many protein targets outside docking studies. Learn how predicted structures become receptor starting points for protein–small-molecule docking and virtual screening with AutoDock Vina.