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Research articles, tutorials, and practical guidance tagged Meeko.
Find a method, workflow, scientific concept, or software decision.
Prepare single ligands or SDF libraries for AutoDock Vina with Meeko while preserving chemical identity, state, atom mapping, validation decisions, and provenance.
Read the analysisFilter the publication by research area or keyword.
Evidence-led articles on scientific methods, reproducible workflows, and software decisions.
Use mk_prepare_receptor to create AutoDock Vina receptor PDBQT and box files while documenting parsers, residue decisions, outputs, validation, and provenance.
Learn what a PDBQT file stores, how ligand torsion trees differ from rigid receptor records, why bond orders can be lost, and what to inspect before an AutoDock Vina run.